OK.....here it goes....I keep blowing a fuse..."Sub fuse F (20A) (inside the fuse box - controls Fuel Injection, connects to the engine stop relay)"
I started off with replacing the Regulator then the Stator since my battery wasn't charging. The battery was good by the way...NEW. In addition, the bike would seem to lose power at a steady speed...like 40 mph. The RPM's would jump up and down so the assumption was that the Regulator or Stator was going out and not supplying the bike with enough power. This was an easy fix as far as I know....
When I put everything together, which went smooth, I started the bike with a full battery and it ran for about 5 minutes during warm up and the 20amp fuse blew. I put another one in and it blew immediately when I flipped over the engine stop switch to ON.
I've checked all the wiring and harness connectors without taking them apart yet. I've made sure everything is connected and grounded as far as I can tell. I've checked the relays, the fuel pump and the engine stop switch. Everything seems to be fine. I've looked at connections with a meter (which I have very little experience with.) and everything seems fine.

Does anybody have any idea what I should be looking at? or testing with the Voltage meter? This has been so frustrating!!
It seems to be another problem entirely but maybe I'm wrong...did I "F" something up?
Any help would be greatly appreciate...thanks guys!