listening to intake noises through the RC51's snorkel is anything but a science.
your flapper valve is constantly fluctuating to vacuum Hg changes and you'll hear every noiose that echos through the bike, from the airbox to the throttle body venturi harmonics.
disconnect and plug the flapper vacuum source and see if it stops.
i'm not dismissing your claim: i just don't know that i'd worry about it, without any performance losses or bad drivability to make it worth losing sleep over.
Exhaust leaks will present themselvees more as a "tick" than a "chiff". Don't forget that electronic fuel injectors have their own little somg as well when activated.
